PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00005g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 263aa    MW: 28706.8 Da    PI: 8.3671
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00005g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.5e-20142176135
                      GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                               C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Niben101Scf00005g00003.1 142 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 176
                               ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.6E-19136188IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.89136172IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-13139177No hitNo description
Gene3DG3DSA:3.30.50.103.7E-17140176IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.85E-13141173No hitNo description
PROSITE patternPS003440142167IPR000679Zinc finger, GATA-type
PfamPF003206.1E-18142176IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MMHRCSSSCH GSMVGPCSCG LFHSQSNVTT TTSSTFSMLF SHNPSAFDNE YSENMYSFAP  60
SSSSVDCTLS LGTPSTRLTN DIREKRVVQS LERRSSYMSN FCWDILQPKQ HTSPPSSAHK  120
STRGGSGGSN TNSTDPLVAR RCANCDTTST PLWRNGPRGP KSLCNACGIR FKKEERRASA  180
AAATANGGRG GGGMDTQHMI NSTASWVHHS QPPKMPCFSS AAYGNEFRFI EDDDRDSDAT  240
AIPFLPWRLN VADRPSLVHD FTR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186192GGRGGGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016500814.11e-180PREDICTED: GATA transcription factor 19-like
SwissprotQ8LC791e-58GAT18_ARATH; GATA transcription factor 18
TrEMBLM0ZVG91e-100M0ZVG9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000090311e-100(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38182346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.16e-51GATA family protein